Initialize a Toolbox

Creates a new Toolbox object with empty tool list and valid mamba path. This is the starting point for managing bioinformatics tools.

Usage

sn_initialize_toolbox(base_dir = NULL, mamba_path = NULL)

Arguments

base_dir

Character. Base directory for tool installations. Installation paths will be \base_dir\/\tool_name\/\version\.

mamba_path

Character. Path to mamba/micromamba executable. If NULL, will try to find automatically.

Value

Toolbox object.

See also

Other tool management: .sn_validate_tool_legacy(), sn_add_tool(), sn_diagnose_tool(), sn_install_micromamba(), sn_install_tool(), sn_remove_tool(), sn_reset_toolbox(), sn_validate_tool()

Examples

if (FALSE) { # \dontrun{
toolbox <- sn_initialize_toolbox("/opt/biotools")
} # }