Articles

Getting Started

Quick Start Guide

Advanced Usage

Advanced Usage

YAML Tool Specification

Creating Custom Tools

Mock Data Generation

Tools Documentation

Individual tool documentation and usage examples

Tools Overview

Tools Index

Bedtools

Deeptools

Fastp

Fastqc

Hisat2

Kallisto

Kraken2

Macs2

Multiqc

Pyscenic

Salmon

Sambamba

Samtools

Scanpy

Seqkit

Sra Tools

Star

Stringtie

Subread