Get Tool from Toolbox

Safely get tool object from toolbox instead of using direct @ access.

Usage

sn_get_tool(toolbox, tool_name)

Arguments

toolbox

Toolbox object

tool_name

Character. Tool name

Value

Tool object

See also

Other accessor functions: sn_get_installed_versions(), sn_get_tool_commands(), sn_get_tool_name(), sn_get_tool_version(), sn_get_tool_versions(), sn_get_toolbox_tools(), sn_get_toolcall_outputs(), sn_get_toolcall_runtime(), sn_get_toolcall_status(), sn_is_tool_installed(), sn_is_toolcall_success()

Examples

if (FALSE) { # \dontrun{
# Instead of: toolbox@tools[[tool_name]]
tool <- sn_get_tool(toolbox, "samtools")
} # }